[week 9] New and Emerging communities

This is the last day of my summer internship. It has been a superb experience. I’ve recieved very generous and professional help from mentors and many other members from DataONE community.  I am especially very grateful for Suzie and Dane. They keep encouraging me and providing guidance on everything. I’ve learned numerous Continue reading [week 9] New and Emerging communities

Week 8: New and Emerging Communities

So far we have six interviews recorded. I’m working on transcriptions now! Soon I’ll wrap up with this summer’s outputs. Conducted three researcher interviews and transcribed one interview. Contacted a list of authors of articles that are in our case studies spreadsheet. Documented more details in case selection method. Next Continue reading Week 8: New and Emerging Communities

Week 7: New and Emerging Communities

This week: Conducted one interviews and transcribed one interview. Contacted a list of authors of articles that are in our case studies spreadsheet. Two replied with interests. Documented more details in case selection method. Next step: Send out recruitment emails again to the ones that haven’t replied yet. Expand case Continue reading Week 7: New and Emerging Communities

Week 9 : Reproducibility of Script-Based Workflows – Wrap up

For this week, I kept working on reproducing the LIGO script on docker and Reprozip experiment by building “LIGO script” container on top existing YW container.  Additionally, I tried to understand the bridge between Docker and Reprozip which are for sharing dependencies but orthogonal kinds docker, i.e one is for software dependencies; Continue reading Week 9 : Reproducibility of Script-Based Workflows – Wrap up

Week 5: New/Emerging Communities

This week’s activities: Sent out first round recruitment to a list of people in Synthesis Centers. Contacted Amber for more potential participants. Expanded the list of case studies. Looked at member nodes such as USGS, NEON, KNB, LTER, etc. Updated bibliography with a series of papers on interdisciplinary collaboration. Next Continue reading Week 5: New/Emerging Communities

Week 9: Documentation and finishing up with evaluation

Since the past few weeks, I was working on evaluating the ontology matching algorithm on our dataset. After completing the code for performing evaluation and running it, 0 values for precision, recall and f-score were obtained. Manual inspection of the source ontologies revealed that  the “class name” were uninformative and Continue reading Week 9: Documentation and finishing up with evaluation

Week 8 : Reproducibility of Script-Based Workflows – Docker and ReproZip experiment

After a week concentrating on reproducing the LIGO script on docker and ReproZip experiment, I encountered some issues with “broke” data dependencies and software dependencies when running script on different platforms, but finally figured out how to solve them.I also made document about reproducibility in light of the system dependencies issues for deployment Continue reading Week 8 : Reproducibility of Script-Based Workflows – Docker and ReproZip experiment