Most of today was spent tracking the Biological Magnetic Resonance Data Bank (BMRB) ID numbers in Google Scholar. It was really hard getting rid of the “chatter” in the search results and determining which citations actually cited the dataset based on the small blurb on Google Scholar. I collected 77 articles that potentially cited Continue reading June 20, 2011 – Tracking BMRB
Today I finished analyzing the articles collected yesterday from Google Scholar for the Array Express datasets. After removing a few articles because they were duplicates of the published Data Collection Article, either in thesis or report form, I was left with a total of 30 articles. Of these, 1 had Continue reading June 18, 2011 – Analyzing Array Express for Data Reuse
Today was spent finding the rest of the PubMed IDs or DOIs for the Array Express datasets, searching for the Array Express dataset accession numbers on Google Scholar, and importing the full-text and DOI’s for the results into Mendeley. I plan on analyzing the full-text of the 38 articles to Continue reading June 17, 2011 – Tracking Array Express
This morning I finished finding the DOIs for the Data Collection Article for the GEOROC datasets. I did a trial search on Google Scholar with the search terms GEOROC8501 OR GEOROC 8501. However, after collecting 16 articles found by searching for the first 20 datasets, none actually cited the data. Continue reading June 16, 2011 – GEOROC data repository
This morning I finished tagging GEO cited articles which can be seen this this Mendeley group. A total of 165 articles were found by searching Google Scholar for the GEO applied accesion numbers. The number of hits for each dataset can be seen from this Google Spreadsheet. Of the 165 Continue reading June 15, 2011 – Tracking GEO and finding DOIs
Today was split between two tasks: rounding up the DOIs for the Data Collection Articles, and continuing to work on the classification of the data cited GEO articles. I found most of the DOIs for the Data Collection Articles in the Pangaea Dataset. This was pretty easy as most of Continue reading June 14, 2011 – DOIs and GEO tracking
Today has been spent searching Google Scholar for the GEO Accession numbers and importing the citations to Mendeley. Here is the Google Spreadsheet with the GEO search terms and number of Google Scholar hits. Here is the Mendeley Group with the citations and tags that I’ve applied. I imported approximately Continue reading June 13, 2011 – GEO Accession Number Search
Today I finished collecting the search results based on TreeBASE accession number from Google Scholar, imported the full text into Mendeley, and searched to determine if the dataset was reused or not. Search terms used and hits in Google Scholar can be found in this Google Spreadsheet. The citations and Continue reading June 12, 2011 – TreeBASE Accession Number Search
From my point of view this week has been very productive. I flew out to Bellingham, WA on Sunday and spent all day Monday and Tuesday meeting with her at various coffee shops around town and at the Bellingham Public Library. We determined that Mendeley will be our data collection Continue reading Week 2 Weekly Update
Today has been a fairly productive day. I started writing out our methods section for the ASIS&T poster proposal abstract which is due July 1st. The parts I have hacked out so far can be found in blue print in this Google Document. That working paper document also contains an Continue reading June 10, 2011 – Today’s Progress