This the last week of my DataONE summer intern, but it is not the end. I will plan to present our work by research poster in late August for DataONE All Hands Meeting, especially the provenance event. During this week, I firstly updated the RDF Turtle files following our most Continue reading Week-9-Update
During this week, we had an intensive discussion about the YesWorkflow Data Model vocabulary. Finally, we came to a conclusion that we should adopt the following predicates between Port, Data and Resource. <Port> yw:sends/yw:receives <Data> <Data> yw:wasReadFrom/yw:wasWrittenTo <Resource> To distinguish prospective and retrospective provenance, we used two different RDF Turtle Continue reading Week-8-Update
The main task for this week is still updating the YesWorkflow Model Vocabulary and Structure, and modifying SPARQL queries for advanced questions. This is our GitHub repository including the Model Specification, RDF Turtle facts, and SPARQL queries: simulate_data_collection example 1. YesWorkflow SPARQL Queries For the SPARQL queries, the combined queries Continue reading Week-7-Update
During this week, interns and mentors had an intensive discussion about the YesWorkflow Model vocabulary and its mapping to ProvONE Model. A critical distinction between YW and ProvONE is that YW has three types of ports, while ProvONE only has the general class port. Therefore, I created a hierarchical model Continue reading Week-6-Update
During the middle week of my intern, I continued working on improving the YesWorkflow Conceptual Model vocabulary and structure. As suggested by my primary mentor, I utilized Markdown format combined with HTML tags to create the model vocabulary documentation table to make it machine-readable. I also created another table for Continue reading Week-5-Update
During this week, I further improved the RDF model for YesWorkflow model facts. Especially, I introduced three self-defined associations (yw:isAssociatedWith, yw:filePath, yw:portType) and one class (yw:Data). These namespaces can help me to distinguish input ports, output ports and parameters, and to connect data with URI templates to corresponding ports. To Continue reading Week-4-Update
This is the third week of my internship. I felt much comfortable to work with the professors and my co-partner. We basically made progress in schedule. For this week, given the elementary model structure in RDF/Turtle file for simulate_data_collection example of YesWorkflow, I further improved the RDF/Turtle data model by Continue reading Week-3-Update
During the second week, Linh and I dug into RDF/Turtle format and SPARQL syntax for testing the existing incomplete Turtle file (refer to Prefix rdf, rdfs, provone, owl and self-defined yw) and relevant queries. I successfully installed Apahe-Jena on my Windows machine and tested the five existing simple SPARQL queries Continue reading Week-2-Update
This is my first week for DataONE summer intern. I am glad to meet the mentors Bertram Ludaescher, Timothy McPhillips and Paolo Missier. I am also happy to work on the project with another intern, Linh Hoang, who is a PhD student in iSchool of UIUC. She is warm-hearted and Continue reading Week-1-Update