I finished analyzing the Protein Data Bank Web of Science citations today which can be viewed in the PDB – WoS Mendeley Group. I also collected all the full-text articles for Array Express which I will analyze tomorrow. The Web of Science citations for these can be viewed in the Continue reading July 12, 2011 – PDB and Array Express Data Collection
I have had a chance to collect and publish a presentation on my LOD4DataONE findings so far. In particular they are focused on the first use case for this research. I have just updated my notebook’s use cases with this summary powerpoint presentation. It can be found at http://rio.cs.utep.edu/ciserver/ciprojects/udata/LOD4DataONEWeek5.pptx . Continue reading Project Presentation
Last week, having come home from Berlin, I was faced with a problem. On the one hand, I haven’t been able to crack SPARQL. I’m sure it’s a great language (that’s not true), and I’m sure that it is something that is useful to know in the long run (not Continue reading Scraping the Surface
On June 29th through July 1st I attended the Open Knowledge Conference in Berlin, as part of this project. The Open Knowledge Foundation is a small non-profit dedicated towards open data, open science, open government, and virtually every other noun phrase beginning with the word ‘open’. The OKCon is one Continue reading OKCon: Recap
I have created a data file for the module, which includes parasite species richness (log transformed), sampling effort (log transformed number of studies on the host species), and several ecological traits including adult body mass (log transformed), population density and geographic range size (log transformed). I uploaded the file to Continue reading Data set and pdf file uploaded
Today I finished collecting the Full Text for the PDB Web of Science citations and analyzed 2/3rds of them. The tags applied thus far can be viewed at the PDB – WoS Mendeley group. I ran into trouble this afternoon with an error in Mendeley not letting me sync my Continue reading July 11, 2011 – Protein Data Bank Data Collection
Week Five Goals The main goal for this week was to work toward integrating the DataONE data that I have extracted to work better with the various browsers I have found. In particular this was going to require that I understand better the vocabularies used by the RDF browsers and Continue reading Week Five Update
This past week things have been moving at a faster pace as we selected our voiceover winner Jim Taylor who has started recording our first module. Over the next few weeks we will be continually in the process of completing and finalizing all modules, writing and finalizing of module scripts, and doing last minute edits before moving to the Continue reading Speed it up. . .!
Today I finished analyzing the Web of Science article for the ICPSR repository. I did not find any instances of data reuse. I have also nearly finished collecting full-text articles for the Protein Data Bank WoS citations. ICPSR citations can be viewed in the ICPSR – WoS Mendeley group and Continue reading July 8, 2011 – Data Collection for ICPSR and PDB
I have received the data from Charlie. I will fill in the gaps in the documents this couple of days. Meanwhile, I am trying to make a new version of the documents using LaTeX. I’m still very slow, but it’s kind of fun 🙂 Which referencing tool do you recommend Continue reading Data and LaTeX