In the final week of our internship we’ll make separate blog posts and use our posts to both provide updates about our project and also reflect on the experience of our two month DataONE internship. In the final week of our project, we made additions and edits to the data Continue reading Week 9: Best practices and reflection
Hi All, This was my last week of the internship and major task for this week was to create the documentation for the tool created and a poster for the DataONE-AHM. Wrapper for execution: A shell script was created as a wrapper for execution of the tool which takes the file Continue reading Week 9 : Summary
In our 8th week, we worked with project mentors to refine our systematic review database and analysis. The main question for our internship was whether a selection of data-aggregation studies could be repeated through repositories available in DataONE. During the preceding weeks we extracted dozens of pieces of data from Continue reading Week 8: Analysis, figures and data citation best practices
Welcome to the seventh installment of Project 2: Supporting Synthesis Science! First, I neglected to include in last week’s blog one of the nice plots Rob made to display the characteristics of our set of data-aggregation studies. This one is a map showing how the number of papers breaks down Continue reading Week 7: Modeling data-aggregation input data source and output information
Hi all, This is my week 9 which is the last week. I have had a wrap up process to clean up the codes and documentations for the codes to make sure everything executable for others who might want to use it. Furthermore, I did give a presentation about what Continue reading Week 9 – Wrap up and summary
Hi All, This blog is in follow-up with my earlier blogs for the Project 4: Extending Libmagic for Identification of Science Resources. This week was very fruitful and we were able to resolve most of our design and development issues for the final application. The application developed is in its final Continue reading Week 8: DataONE MetaData parser Application
Hi All, This blog is in follow-up with my earlier blogs for the Project 4: Extending Libmagic for Identification of Science Resources. In this week, we discussed to add more functionality in our parser and to make it easily configurable for the new file formats to add. Using a configuration file: Continue reading Week 7: DataONE Metadata Parser
Hi all, In my week 8, I have focused on: storing additional provenance information that a result in a package is derived from which object in another package (we call it stiching for now), and updating the bundling script introduced last week as well as the test of a tale Continue reading Week 8 – Stitching two packages using provenance
In our sixth week of the synthesizing science project, we jumped into the analysis of data we’d extracted, corrected, and re-tooled over previous weeks. This process was aided by establishing a github repository for data and R scripts and by employing the very useful “googlesheets” R package (by Jenny Bryan) Continue reading Week 6: analysis of science synthesis data
Hi All, This blog is in follow-up with my earlier blogs for the Project 4: Extending Libmagic for Identification of Science Resources. After resetting our goals for rest of the project in the previous week. The goal is to extract metadata from different file formats using Apache Tika. Since we want Continue reading Week 6: Parser, Metadata Mapper Using Apache Tika