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    • 2019
      • Citation of DataONE
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    • 2018
      • Sharing Reproducible Research
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    • 2017
      • Semantic Annotation of Workflow Scripts
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    • 2015
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    • 2014
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    • 2013
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    • 2012
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    • 2011
      • Best Practices Learning Modules
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      • How Scientists Analyse Data
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      • Reuse of 1000 datasets
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Category Archives: How Scientists Analyse Data

Summing Up – And An Update

Posted on September 20, 2011 by Richard Littauer

As you may have noticed, I haven’t posted on here for a while. I neglected to post after the last meeting in Berkeley, and then went off of the internet for a couple of months to try and get rid of my tendonitis. It didn’t go away, and I haven’t Continue reading Summing Up – And An Update→

Posted in How Scientists Analyse Data

Summing Up – And An Update

Posted on September 20, 2011 by Richard Littauer

As you may have noticed, I haven’t posted on here for a while. I neglected to post after the last meeting in Berkeley, and then went off of the internet for a couple of months to try and get rid of my tendonitis. It didn’t go away, and I haven’t Continue reading Summing Up – And An Update→

Posted in How Scientists Analyse Data

Yet More Graphs

Posted on July 28, 2011 by Richard Littauer

Today I spent the morning trying to get MySQLdb working so that I could fully integrate Python with my databases, so that I could also fully integrate R into a code that would enable me to do a lot of graphs easily. After a few hours, I gave up, due Continue reading Yet More Graphs→

Posted in How Scientists Analyse Data

More Scraping, More Graphs

Posted on July 25, 2011 by Richard Littauer

I’ve been pretty busy these past two weeks. I’ve been perfecting and gathering more information using myย screen scraping code. This means not only information on embedded workflows, beanshells, authors, myExperiment data like the amount of favourites, etc, but pretty much everything else one would like to know about the workflows Continue reading More Scraping, More Graphs→

Posted in How Scientists Analyse Data

Wednesday: Scrape Scrape

Posted on July 13, 2011 by Richard Littauer

Today I wanted to see if it would be possible to get more data off of the site automatically, which might be useful. It was. scrapescrape.py = The new code for my scraping of myExperiment. I figured out that I could, in processors, get the amount of embedded workflows in Continue reading Wednesday: Scrape Scrape→

Posted in How Scientists Analyse Data

Open Source Code – Screen Scraper

Posted on July 12, 2011 by Richard Littauer

After three hours of madly cycling around the city looking for keys to my friend’s flat who I had lent my computer to without getting the code off of it which I needed to upload to the SQL server, I finally was able to upload the python code that Steve Continue reading Open Source Code – Screen Scraper→

Posted in How Scientists Analyse Data

Scraping the Surface

Posted on July 12, 2011 by Richard Littauer

Last week, having come home from Berlin, I was faced with a problem. On the one hand, I haven’t been able to crack SPARQL. I’m sure it’s a great language (that’s not true), and I’m sure that it is something that is useful to know in the long run (not Continue reading Scraping the Surface→

Posted in How Scientists Analyse Data

OKCon: Recap

Posted on July 12, 2011 by Richard Littauer

On June 29th through July 1st I attended the Open Knowledge Conference in Berlin, as part of this project. The Open Knowledge Foundation is a small non-profit dedicated towards open data, open science, open government, and virtually every other noun phrase beginning with the word ‘open’. The OKCon is one Continue reading OKCon: Recap→

Posted in How Scientists Analyse Data

Monday: Scholar, Notes

Posted on June 27, 2011 by Richard Littauer

So, I’ve gone through and downloaded and uploaded another 200 or so papers on workflows. Many of these I got because I wanted papers that cited Bertram’s Scientific Workflows and the Kepler System. I have a couple hundred of those, now. I then went on to realise that the ones Continue reading Monday: Scholar, Notes→

Posted in How Scientists Analyse Data

Sunday: Updates

Posted on June 27, 2011 by Richard Littauer

Since the last post a few hours ago, I have been working steadily but surely, in order to make up time that was lost in travel or at conferences over the past couple of weeks. I also need to be sure that I am ready for Berlin, which is as Continue reading Sunday: Updates→

Posted in How Scientists Analyse Data

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This material is based upon work supported by the National Science Foundation under Grant Number 083094. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
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